Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015877531.1_cds_XP_016436486.1_32342
CDS Infomation

[gene=LOC107762631] [db_xref=GeneID:107762631] [protein=nuclear pore complex protein NUP1-like isoform X2] [protein_id=XP_016436486.1] [location=complement(join(27558..28091,28307..29008,29263..29343,29436..29723,30002..30326,30699..30851,35094..35116))] [gbkey=CDS]
Sequence

ATGACGAGAAATGTACTCCAAGTATCTTCTGAAGGAAAGGAAGAGGATCAAAGAATGGTA
AAATTGAATGGGATCTCCGAAGCAGAGAAGCAGGAAGAAGAGAAATCACAGAATTCCTCT
GATAAATCTGAGATTTCCAGAATTGAGCGGCTCATGCAGGGGAAATCATTTTCGAGAGAT
GAAATAATGCGTTTGACAGAGATATTAAACTCGAGGGTTATTGATGACCAAGAAAAGAAA
ACTAGCAAAACAGCTGAAAGGGACGTTGGAAGGTTTCATTTAACACACGAGACACCTAGA
AGACCATATCACAAGAAGCAGGATGAAATGGAGTTTGCTATGCCAGGAACTTCAACACCT
CTTCCCCAAACAAATTTTGCTATGCCAGGAACTTCAACACCTCTTCCTCAAATAAATTTT
GCTATGCCAGGAGCTTCAACACCTCTTCCCCAAGCAAATTTTGCTATGCCAGGAACTTCA
ACACCTCTTCCCCAAACAAATGTACAAGATGAAGTTGGCGCTTCACCCATTGATATTGCA
AGAGCTTACATGGGAAGTCGTAGGTTGGAAAAAGGATATGATTCTTGCAGTCTTGTATCC
AAGGGAGAACAAGTTCCACAAAACAGGTTTCATCCGCCACCTTCGCTTAAGTCATCGAGT
TGTTGGCCGGCTGCCATGCTGCAAGATCAGCATAGTCATATTACTCCACAGAGTCAGAGA
GGATATGGGCTTGTTGAGTTTCCGAGGACCCCATACTCTAGAACTTTATTACCGAAATCC
AGAGATAGGACTCAGTCGCAGGCTGGTAGCAAGTGGCCAGATCTCTCAGCGAAAACCTTC
CAACAATCTCAATCATCAATCTACAGCCAGGAGAAGACTAGGAGTGATTTACCTCATCTA
AGCTATGGATCTGCGGGACCCATTCGGCGTATACGGAATAAATTTGGATCAGAATCTCGG
CCTCAGAGATCCATATTCCTGAATTCCAGAAATGCTTCTTCACCTTTAGGAAAAATTGGT
GCTTCTGAAGTTTTCTCGCCTGCTTCTAGGAAGAACTTGGAAGTTGGTCAACCTAGTGGT
GTCGAGAAGGACAAATCAGTGCCGCATAGAGCAAGCAGGTCTGAAGAAGCTATGCCGCTC
AATGAGACTGTAAGAAAAATATTAGAGCAACTTGATAGACACAAGCCCACTCCTGCAGAA
AAGGAAGCTGAATTGAAGCTGGCCAGCGAATGGAAGAAATATCCCCGCAATGAAATCTCT
GATTCCACTCCAAATGGTAAAACAAAATCATCACATTTAGGAGAATTTGGTATGCGCAGG
AACAATGGGCTGGCAGCTGCCCGATCGTCCAAGGATGGAGATATTGGCACAGTCAATCAC
GTGGAAATATCTCAGGAGCAAACTGTGCGTGAAGCTGACACTGCTGCGGATGCTAGTGCT
AAAGCTTCTAGCATAGATGGTGTATTTGTTGCGACGACTGGAGCTGATACAGTGCCTTCA
TTCACTTTTAAGGTTGCTGATTCCCAAGTTAAAAATTTCTTTTCTGGTTCTCGCACTCCT
AGTTTGGACCAGGACTCTGCAGGCACTGATGATGGACAGAAAGATAAAGGTACTGATGAA
GGAAAGAAAGATAAAGGTACTACCCCCCGGTGGCCTTTTCATCAAAGTAATGGGCAGAAT
GCCACAACGTTATCCAACTCCACGTGTTTTGAGCTACCAAGAAATGCTGCTGGACAGGCC
TCCGGGACAAAACCTACTTTGCCATCCATTTCTATTAATAAGCGGAATCCTAGAAATGCA
ACGTTCCCTGACAATGGGTTTGGATTCACTTTTCCAGTAGCTGCTTCATCTGGTGCACTT
TCAGAACCACCAACACCATCCATCATGCCATCGTCCTCAGCCAGTGTCCTCTCTCAGCCC
ACGGATGCATCCACTGTTCCAGTATACAGCTTTGGCACGGGGAAATCAGCTGAACGCTTG
GTCTTCTCTTTTCCCTCTACGAGCAATGCGTCTGTCTCCGTGGATGCTTCAGATCTAAAG
TTCAGCTTTGGTGCAGACAGGAGATCAAGACTATCTTTCGGTGCAGTAGGAAAAGCAACA
TGCTAG

Peptide Sequence

PEP ID

XP_016436486.1
PEP Infomation

PREDICTED: nuclear pore complex protein NUP1-like isoform X2 [Nicotiana tabacum]
Sequence

MTRNVLQVSSEGKEEDQRMVKLNGISEAEKQEEEKSQNSSDKSEISRIERLMQGKSFSRD
EIMRLTEILNSRVIDDQEKKTSKTAERDVGRFHLTHETPRRPYHKKQDEMEFAMPGTSTP
LPQTNFAMPGTSTPLPQINFAMPGASTPLPQANFAMPGTSTPLPQTNVQDEVGASPIDIA
RAYMGSRRLEKGYDSCSLVSKGEQVPQNRFHPPPSLKSSSCWPAAMLQDQHSHITPQSQR
GYGLVEFPRTPYSRTLLPKSRDRTQSQAGSKWPDLSAKTFQQSQSSIYSQEKTRSDLPHL
SYGSAGPIRRIRNKFGSESRPQRSIFLNSRNASSPLGKIGASEVFSPASRKNLEVGQPSG
VEKDKSVPHRASRSEEAMPLNETVRKILEQLDRHKPTPAEKEAELKLASEWKKYPRNEIS
DSTPNGKTKSSHLGEFGMRRNNGLAAARSSKDGDIGTVNHVEISQEQTVREADTAADASA
KASSIDGVFVATTGADTVPSFTFKVADSQVKNFFSGSRTPSLDQDSAGTDDGQKDKGTDE
GKKDKGTTPRWPFHQSNGQNATTLSNSTCFELPRNAAGQASGTKPTLPSISINKRNPRNA
TFPDNGFGFTFPVAASSGALSEPPTPSIMPSSSASVLSQPTDASTVPVYSFGTGKSAERL
VFSFPSTSNASVSVDASDLKFSFGADRRSRLSFGAVGKATC

Transcript Sequence

Gene sequence data has not been registered.